Welcome to dissectBCL’s documentation!
dissectBCL is a demultiplexing pipeline for Illumina sequencing data, loosely based on TWTWTH.
The workflow is relatively simple:
a new flowcell is found
parkour is queried and a sampleSheet is read
BCLConvert is used to demultiplex into samples.
Re-name/organize project & samples, run a number of QC metrics.
data is transferred to PI specific directories or uploaded with fexsend