Welcome to dissectBCL’s documentation!

dissectBCL is a demultiplexing pipeline for Illumina and Aviti sequencing data, loosely based on TWTWTH.

The workflow is relatively simple:

1. a new flowcell is found

2. parkour is queried and a sampleSheet is read

3. BCLConvert is used to demultiplex into samples, or Bases2fastq in case of Aviti data.

4. Re-name/organize project & samples, run a number of QC metrics.

5. data is transferred to PI specific directories or uploaded with fexsend

Overview

• Usage
• workflow
• configfile
• executables